Browse of TCMCG034C41989 protein

CDS

Accession Number	TCMCG034C41989
gbkey	CDS
Protein Id	XP_028956286.1
Location	join(37346312..37347215,37347617..37347713,37348077..37348179,37348277..37348330,37348435..37348509,37348692..37348760,37348889..37348972,37349140..37349334,37349784..37350334,37350418..37350547,37350701..37350792,37350888..37351066,37351218..37351420,37351530..37351631,37351722..37351884,37352269..37352558,37352651..37352788,37353143..37353222,37353333..37353432,37353556..37353685,37353995..37354212)
Gene	LOC103408170
GeneID	103408170
Organism	Malus domestica

Protein

Length	1318aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA534520
db_source	XM_029100453.1
Definition	DNA mismatch repair protein MSH6 [Malus domestica]

EGGNOG-MAPPER Annotation

COG_category	L
Description	Component of the post-replicative DNA mismatch repair system (MMR)
KEGG_TC	-
KEGG_Module	M00295        [VIEW IN KEGG]
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko00002        [VIEW IN KEGG] ko03400        [VIEW IN KEGG]
KEGG_ko	ko:K08737        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko01524        [VIEW IN KEGG] ko03430        [VIEW IN KEGG] ko05200        [VIEW IN KEGG] ko05210        [VIEW IN KEGG] map01524        [VIEW IN KEGG] map03430        [VIEW IN KEGG] map05200        [VIEW IN KEGG] map05210        [VIEW IN KEGG]
GOs	GO:0000217        [VIEW IN EMBL-EBI] GO:0000404        [VIEW IN EMBL-EBI] GO:0003674        [VIEW IN EMBL-EBI] GO:0003676        [VIEW IN EMBL-EBI] GO:0003677        [VIEW IN EMBL-EBI] GO:0003684        [VIEW IN EMBL-EBI] GO:0003690        [VIEW IN EMBL-EBI] GO:0003824        [VIEW IN EMBL-EBI] GO:0005488        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006259        [VIEW IN EMBL-EBI] GO:0006281        [VIEW IN EMBL-EBI] GO:0006290        [VIEW IN EMBL-EBI] GO:0006298        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0006950        [VIEW IN EMBL-EBI] GO:0006974        [VIEW IN EMBL-EBI] GO:0006996        [VIEW IN EMBL-EBI] GO:0008094        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0016043        [VIEW IN EMBL-EBI] GO:0016462        [VIEW IN EMBL-EBI] GO:0016787        [VIEW IN EMBL-EBI] GO:0016817        [VIEW IN EMBL-EBI] GO:0016818        [VIEW IN EMBL-EBI] GO:0016887        [VIEW IN EMBL-EBI] GO:0017111        [VIEW IN EMBL-EBI] GO:0030983        [VIEW IN EMBL-EBI] GO:0032135        [VIEW IN EMBL-EBI] GO:0032300        [VIEW IN EMBL-EBI] GO:0032991        [VIEW IN EMBL-EBI] GO:0033554        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0042623        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043570        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044260        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0050896        [VIEW IN EMBL-EBI] GO:0051276        [VIEW IN EMBL-EBI] GO:0051716        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0071840        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:0097159        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1901363        [VIEW IN EMBL-EBI] GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTCGGCGTCGCGTCGTCGGACCAACGGCCAATCCCCACTGGTCAACCCACAGCGCCAAATCACTTCCTTCTTCTCCAAAGCCACTTCCACTCCGTCCCCAATTTCTTCCAAACAAACCCAAAACCCTAAATCTACCCGCATTTCTTCCAAGCAAACCCAAAACCCTAAATCCACCCCCATTTCTTCCAAACCAACCTTAATCCCTAAATCTACCCCCATTTCTTCCAGACAAACCCTAAACCCTAATCCGAATCCTAGTCCCGGTCATAGCCCTAGCCCCACAACCCCTTCGCCTCTCGATTCCAAGCCCAGCTCCAAGACCAGCCCCAAAAAATCCCACGGCCACGAGGTTGTCGGGAAGAGGATCAAGGTTTACTGGCCGTTGGATAAGAGCTGGTACGAAGGTTATGTCAAGTGCTTCAATAAGCACAGTGGTAAGCATTTAGTTCAGTACGACGATGCTGAAGAAGAAATGTTGGATTTGGAAATGGAGAAGATCGAGTGGGTCCCGGAAACCGTGAAGATTTTCAAGCGCTTGAGGCGAGGCCCTTTGCCAACTCCCACCAATGTGGATGTAGATGTGGTGATGGAGGATGAGGATAAGGAAGACAGCAACGGTGTAGCTGATGATGATTCGAGCGATGAGGATTGGGGAAAGAGTGGGGACAAAGAGTTAGTTGCTGAGGTTGGTGACGATGAAGAGGAGCTTAGGGAATTGGAGGATGAGGAAGATGATGTGGTTCCCACGAACACAAACAAAAGAAAGCGGGGTGACTCCGGTGGTAGAAGAAAATTGAGCGGTGGAGGGAGTTTGGGGTCTGCTAAGAAGACCAAGTGTGGTGGAAATGTGGGTATGAACGGCTTCAAGGGCGTGTCACCGGAGCCTACCCCTAATGCTGAAGGGACAAAGGCGACTAATGGTATGGATACTGTTTTATCTGGTGATGCCTCAGCAAGGTTTAGCTTGCGTGAAGCTGAGAAGTTGCACTTCCTTGGGGAACAGCGCATGGATGCCAAAAGAAGAAGCCTTGGAGATGCAAATTATGATCCAAGAACTCTGTACTTACCTCCCGGATTCTTAAAGAGTTTATCAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAAACACATGGACAAAGTTATATTTTTCAAGATGGGCAAATTTTATGAACTTTTTGAAATGGATGCACATATAGGAGCAAAAGAACTTGGTCTGCAGTATATGAAGGGTGAACAACCCCATTGTGGATTTCCGGAGAAGAATTTCTCAATGAACGTGGAGAAACTTGCTAGGAAGGGGTATCGAGTTCTTGTAGTGGAGCAGACAGAAACACCTGAACAGATGGATCTTCGTCGTAAAAAGGATGGCTCTATAGATAAGGTTGTGAAACGTGAAATATGTGCAGTGGTTACAAAAGGAACACTAACTGAGGGAGAGATGCTGTCAGCAAACCCTGATGCTTCTTATCTAATGGCAGTGACTGAAAATTCTCAGAATTTGGCAAACGAAAATGCAGAGCGGGTTTTTGGGGTTTGTGTAGTTGATGTTGCTACCAGCCGGGTCATTCTTGGGCAGTTTGGAGATGATCTAGAGTGCAGTGCCTTGTCTTGTCTCTTGTCTGAGCTGAGGCCTGTTGAAATTGTAAAACCTGCAAATCTACTCAGTCCTGAAACAGAGAAAGTGCTGATTAGGCATACAAGAAGTCCTCTAGTGAATGAGTTAGTCCCAGTATTGGAATTCTTGGATGCTGAGAGAACTGTTCAGGAAGTTAGAAGTATATACAGGCGTGCCGATGATCAAGATGTTTCTGGTTCTCCAAAGAAAGACGGTTTTCATGGCAGTGATTCTCATTTAGAAGAAGATAGCTATGGCTGCTTGCCAGATGTGTTGTCAGAGATGGTGAGAGCAGGTGAGAATGGCATCTCTGCACTTTCAGCTCTTGGAGGTGCTCTTTTCTATTTAAAGCAGGCCTTCCTGGATGAGACAATACTCAGATTTGCAAAATTTGAGTTACTTCCAAGTTCTGGTTTTGGTGATACCGTATCAAAACCATACATGGTTCTTGACTCAGCTGCCCTAGAGAACCTTGAGATTTTTGAGAACAACAGAAATGGAGACTCTTCAGGGACATTGTATGCACAATTGAACCACTGTGTTACTGGATTTGGGAAGAGATTGCTTAGAACATGGCTTGCAAGACCTCTCTATCATGTAGAATTAATAAAGCAACGCCAGGATGCTGTTGCAAGTCTTCGGGGAGTTAATCTTCCTTATGCACTTGAATTTCATAAAGCAGTGTCTAGGCTGCCGGACATGGAGCGGTTGCTTGTGCGTGTCTTCTCTAGTAGTAATGCTTGCGGAAGGAATGCTAAGAAAGTGGTTTTATACGAGGATGCTGCAAAAAAACAGCTTCAGGAGTTTATTTCAGCTTTACGTGGTTGTGAACTCATGGCTCAAACATGTTGTTCTCTTAACGTTATCTTGGAAAATGTTGAATCTGCACAACTTCATCATCTGCTGACACTGGGTAAAGGTCTTCCTGATGTCAACTCAGTTCTAAAACATTTCAAGGATGCCTTTGATTGGGTAGAAGCCAATAATTCAGGTCGTATAATACCTCATGAAGGAGTCGATATTGAGTATGACTCTGCTTGTGAAAAAGTAAAGGAGATAGAGTCTCATTTAACAAAACACCTCCAAGAACAGAGAAAGTTACTGGGAGATAAATCGATCACTTATGTCACAGTTGGAAAAGATTCTTACCTATTGGAAATGCCAGAAAGTCTGTGCAGTTGTATTCCTCCGGATTATGAGTTACGTTCGTCCAAAAAGGGTTTCTCGAGGTACTGGACCCCAGATATCAAGAAGTCATTGACAGAGCTCTCGCAAGCTGAAACTGATAAGGAGTCCTCACTAAAAAGCATTTTGCAGAGGTTAATTGGACGTTTCTGCGAGCATCGTCTTAAATGGAGACAATTGGTCTCTGTGACTGCAGAAATCGATGTTTTAATCAGTCTAGCAATTGCAAGTGATTATTTTGAAGGACCCTCTTGTCAGCCAGTTGTCATGAGTTCATCATGTACTAATGAAGTACCTCGTTTTTCTGCAAAAAGTTTGGGCCATCCTGTTCTTAGAAGTGATTCTTTAGGAAAGGGTACATTTGTATCCAACGACATTTCCATTGGAGGTTCTGGCCATGCAAGCTTTATCCTTCTCACTGGTCCTAACATGGGTGGAAAGTCCACTCTTATTCGCCAGGTTTGCTTGGCTGTGATTTTAGCACAGTTAGGAGCAGATGTTCCTGCAGAGAGCTTTGAGCTATCTCCTGTTGACCGAATCTTTGTTCGTATGGGTGCTAAAGATAATATCATGGTAGGCCAAAGTACATTTCTGACGGAGCTTTCAGAAACTGCAACAATGCTGTCTTCAGCTACTCGCAATTCATTGGTGGCACTGGATGAACTTGGACGTGGAACATCAACTTCAGATGGACAAGCCATTGCGGAATCAGTTCTTGAACATTTTATCTACAAGGTCCAGTGCCGAGGAATGTTTTCTACCCATTATCACCGACTAGCTGTTGATTATCAAAATAATTCTAAGGTTTCACTATGTCATATGGCATGCCAAGTTGGAAACGGAGATGGAGGTGTGGAAGAAGTTACATTTCTATACAGGTTGAATCCTGGTGCATGCCCTAAAAGCTATGGTGTCAACATTGCACGGTTAGCTGGACTTCCTATTTCAGTCCTTAAAAAAGCTACCGCCAAGTCCAGGGAATTCGAGGCTACATATGGTAAACACAGGAAGGCATCTGGAGATAACATTTGCTTTCAAGAGTTGATTAGTATTGTGGCAAAATTGACGAGTCATGAGTTTACCAAAAGCATTGACATGGACTCCCTGACAGAAGTTTGGCATAGAGCAAGACTACTACAGCAAGAAAGTTGA

Protein:   MSASRRRTNGQSPLVNPQRQITSFFSKATSTPSPISSKQTQNPKSTRISSKQTQNPKSTPISSKPTLIPKSTPISSRQTLNPNPNPSPGHSPSPTTPSPLDSKPSSKTSPKKSHGHEVVGKRIKVYWPLDKSWYEGYVKCFNKHSGKHLVQYDDAEEEMLDLEMEKIEWVPETVKIFKRLRRGPLPTPTNVDVDVVMEDEDKEDSNGVADDDSSDEDWGKSGDKELVAEVGDDEEELRELEDEEDDVVPTNTNKRKRGDSGGRRKLSGGGSLGSAKKTKCGGNVGMNGFKGVSPEPTPNAEGTKATNGMDTVLSGDASARFSLREAEKLHFLGEQRMDAKRRSLGDANYDPRTLYLPPGFLKSLSGGQRQWWEFKSKHMDKVIFFKMGKFYELFEMDAHIGAKELGLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQMDLRRKKDGSIDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVTENSQNLANENAERVFGVCVVDVATSRVILGQFGDDLECSALSCLLSELRPVEIVKPANLLSPETEKVLIRHTRSPLVNELVPVLEFLDAERTVQEVRSIYRRADDQDVSGSPKKDGFHGSDSHLEEDSYGCLPDVLSEMVRAGENGISALSALGGALFYLKQAFLDETILRFAKFELLPSSGFGDTVSKPYMVLDSAALENLEIFENNRNGDSSGTLYAQLNHCVTGFGKRLLRTWLARPLYHVELIKQRQDAVASLRGVNLPYALEFHKAVSRLPDMERLLVRVFSSSNACGRNAKKVVLYEDAAKKQLQEFISALRGCELMAQTCCSLNVILENVESAQLHHLLTLGKGLPDVNSVLKHFKDAFDWVEANNSGRIIPHEGVDIEYDSACEKVKEIESHLTKHLQEQRKLLGDKSITYVTVGKDSYLLEMPESLCSCIPPDYELRSSKKGFSRYWTPDIKKSLTELSQAETDKESSLKSILQRLIGRFCEHRLKWRQLVSVTAEIDVLISLAIASDYFEGPSCQPVVMSSSCTNEVPRFSAKSLGHPVLRSDSLGKGTFVSNDISIGGSGHASFILLTGPNMGGKSTLIRQVCLAVILAQLGADVPAESFELSPVDRIFVRMGAKDNIMVGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFIYKVQCRGMFSTHYHRLAVDYQNNSKVSLCHMACQVGNGDGGVEEVTFLYRLNPGACPKSYGVNIARLAGLPISVLKKATAKSREFEATYGKHRKASGDNICFQELISIVAKLTSHEFTKSIDMDSLTEVWHRARLLQQES